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Murillo T, Ramírez-Vargas G, Riedel T, Overmann J, Andersen J, Guzmán-Verri C, Chaves-Olarte E, Rodríguez C. 2018. Two groups of co-circulating, epidemic Clostridiodes difficile strains microdiversify through different mechanisms, Genome Biology and Evolution, evy059. https://doi.org/10.1093/gbe/evy059
Ramírez-Vargas G, Quesada-Gómez C, Acuña-Amador L, López-Ureña D, Murillo T, del Mar Gamboa-Coronado M, Chaves-Olarte E, Thomson N, Rodríguez-Cavallini E, Rodríguez C. 2017. A Clostridium difficile Lineage Endemic to Costa Rican Hospitals Is Multidrug Resistant by Acquisition of Chromosomal Mutations and Novel Mobile Genetic Elements. Antimicrob Agents Chemother 61: e02054-16.
Martinez A, López G, Bola nos C, Alvarado D, Solano A, López M, Báez A, Quirós S, Mora R. 2017. Building a Personalized Cancer Treatment System. J Med Syst 41: 28.
Suárez-Esquivel M, Baker KS, Ruiz-Villalobos N, Hernández-Mora G, Barquero-Calvo E, González-Barrientos R, Castillo-Zeledón A, Jiménez-Rojas C, Chacón-Díaz C, Cloeckaert A, et al. 2017. Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution. Genome Biol Evol 9: 1901–1912.
Suárez-Esquivel M, Ruiz-Villalobos N, Jiménez-Rojas C, Barquero-Calvo E, Chacón-Díaz C, Víquez-Ruiz E, Rojas-Campos N, Baker KS, Oviedo-Sánchez G, Amuy E, et al. 2017. Brucella neotomae Infection in Humans, Costa Rica. Emerg Infect Dis 23: 997–1000.
ARAYA-HIDALGO E, GUTIÉRREZ-JIMÉNEZ C, CHAVES-RAMÍREZ M, SUÁREZ-ESQUIVEL M, GUZMÁN-VERRI C, BARQUERO-CALVO E. 2017. Sequence analysis of the hypervariable region in hmtp210 of Avibacterium paragallinarum. J Vet Med Sci 79: 1210–1214.
Pérez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarín D, Matzke NJ, Silvestro D, Antonelli A. 2017. Recent origin and rapid speciation of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytol 215: 891–905. http://doi.wiley.com/10.1111/nph.14629.
Suárez-Esquivel M, Ruiz-Villalobos N, Castillo-Zeledón A, Jiménez-Rojas C, Roop II RM, Comerci DJ, Barquero-Calvo E, Chacón-Díaz C, Caswell CC, Baker KS, et al. 2016. Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. Front Microbiol 7: 1557.
Campos-Sánchez R, Cremona M A, Pini A, Chiaromonte F, Makova K.D. A multi-scale genome-wide analysis of the determinants of human and mouse endogenous retrovirus distributions. Plos Computational Biology 2016; http://dx.doi.org/10.1371/journal.pcbi.1004956.
Tomaszkiewicz M, Rangavittal S, Michalovova M, Campos-Sánchez R, Fescemyer H, Ye D, O'Brien P, Chikhi R, Ryder O, Ferguson-Smith MA, et al. A Time- and Cost-Effective Strategy to Sequence Mammalian Y Chromosomes: An Application to the de novo Assembly of Gorilla Y. Genome Research 2016; 26:1-11.
Costa CL, López-Ureña D, de Oliveira Assis T, Ribeiro RA, Silva ROS, Rupnik M, Wilcox MH, de Carvalho AF, do Carmo AO, Dias AAM, et al. 2016. A MLST Clade 2 Clostridium difficile strain with a variant TcdB induces severe inflammatory and oxidative response associated with mucosal disruption. Anaerobe 40: 76–84.
Coto JC, Siles F, Mora-Rodriguez R. 2016. Biocomputing platform module for cancer genomics and chemotherapy. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–6.
Edwin B-V, Francisco S-C, RA M-R. 2016. A biocomputational application for the automated construction of large-scale metabolic models from transcriptomic data. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–6, IEEE http://ieeexplore.ieee.org/document/7942349/
Man-Sai A, Francisco S-C, Mora-Rodriguez R. 2016. A biocomputational platform for the automated construction of large-scale mathematical models of miRNA-transcription factor networks for studies on gene dosage compensation. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–7.
Martinez A, Mora R, López G, Bolaños C, Alvarado D, Solano A, López M, Quirós S, Báez A. 2016. Design and Evaluation of a Personalized Cancer Treatment System Using Human-Computer Interaction Techniques. pp. 717–727, Springer, Cham http://link.springer.com/10.1007/978-3-319-31232-3_67
Molina-Mora J, Mora-Rodriguez R. 2016. Identification of cancer chemosensitivity by ODE and GMM modeling of heterogeneous cellular response to perturbations in fluorescent sphingolipid metabolism. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–6.
Mora-Rodriguez R, Molina-Mora J. 2016. Characterization of heterogeneous response to chemotherapy by perturbation-based modeling of fluorescent sphingolipid metabolism in cancer cell subpopulations. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–7.
Karremans AP, ALBERTAZZI FJ, BAKKER FT, Bogarín D, EURLINGS MCM, PRIDGEON A, Pupulin F, Gravendeel B. 2016a. Phylogenetic reassessment of Specklinia and its allied genera in the Pleurothallidinae (Orchidaceae). Phytotaxa 272: 1. http://biotaxa.org/Phytotaxa/article/view/phytotaxa.272.1.1.
Karremans AP, Bogarín D, Díaz-Morales M, Fernández M, Oses L, Pupulin F. 2016b. Phylogenetic Reassessment of Acianthera(Orchidaceae: Pleurothallidinae). Harvard Pap Bot 21: 171–187. http://www.bioone.org/doi/10.3100/hpib.v21iss2.2016.n4.
Quesada-Gómez C, López-Ureña D, Acuña-Amador L, Villalobos-Zúñiga M, Du T, Freire R, Guzmán-Verri C, del Mar Gamboa-Coronado M, Lawley TD, Moreno E, et al. 2015. Emergence of an outbreak-associated Clostridium difficile variant with increased virulence. J Clin Microbiol 53: 1216–26.
Calderon S, Saenz A, Mora R, Siles F, Orozco I, Buemi ME. 2015. DeWAFF: A novel image abstraction approach to improve the performance of a cell tracking system. En 2015 4th International Work Conference on Bioinspired Intelligence (IWOBI), pp. 81–88.
Igea J, Bogarín D, Papadopulos AST, Savolainen V. 2015. A comparative analysis of island floras challenges taxonomy-based biogeographical models of speciation. Evolution (N Y) 69: 482–491. http://doi.wiley.com/10.1111/evo.12587.
Campos-Sánchez R, Kapusta A, Feschotte C, Chiaromonte F, Makova K.D. Genome landscape of human, bat and ex vivo DNA transposons. Molecular Biology and Evolution 2014; 31(7):1816-1832.
Bogarín D, Karremans AP, Rincón R, Gravendeel B. 2013. A new Specklinia (Orchidaceae: Pleurothallidinae) from Costa Rica and Panama. Phytotaxa 115: 31. http://biotaxa.org/Phytotaxa/article/view/phytotaxa.115.2.1.
Mora R, Dokic I, Kees T, Hüber CM, Keitel D, Geibig R, Brügge B, Zentgraf H, Brady NR, Régnier-Vigouroux A. 2010. Sphingolipid rheostat alterations related to transformation can be exploited for specific induction of lysosomal cell death in murine and human glioma. Glia 58: n/a-n/a.
Lahaye R, van der Bank M, Bogarín D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V. 2008. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci U S A 105: 2923–2928. http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=18258745&retmode=ref&cmd=prlinks.
Ramírez-Vargas G, Quesada-Gómez C, Acuña-Amador L, López-Ureña D, Murillo T, del Mar Gamboa-Coronado M, Chaves-Olarte E, Thomson N, Rodríguez-Cavallini E, Rodríguez C. 2017. A Clostridium difficile Lineage Endemic to Costa Rican Hospitals Is Multidrug Resistant by Acquisition of Chromosomal Mutations and Novel Mobile Genetic Elements. Antimicrob Agents Chemother 61: e02054-16.
Martinez A, López G, Bola nos C, Alvarado D, Solano A, López M, Báez A, Quirós S, Mora R. 2017. Building a Personalized Cancer Treatment System. J Med Syst 41: 28.
Suárez-Esquivel M, Baker KS, Ruiz-Villalobos N, Hernández-Mora G, Barquero-Calvo E, González-Barrientos R, Castillo-Zeledón A, Jiménez-Rojas C, Chacón-Díaz C, Cloeckaert A, et al. 2017. Brucella Genetic Variability in Wildlife Marine Mammals Populations Relates to Host Preference and Ocean Distribution. Genome Biol Evol 9: 1901–1912.
Suárez-Esquivel M, Ruiz-Villalobos N, Jiménez-Rojas C, Barquero-Calvo E, Chacón-Díaz C, Víquez-Ruiz E, Rojas-Campos N, Baker KS, Oviedo-Sánchez G, Amuy E, et al. 2017. Brucella neotomae Infection in Humans, Costa Rica. Emerg Infect Dis 23: 997–1000.
ARAYA-HIDALGO E, GUTIÉRREZ-JIMÉNEZ C, CHAVES-RAMÍREZ M, SUÁREZ-ESQUIVEL M, GUZMÁN-VERRI C, BARQUERO-CALVO E. 2017. Sequence analysis of the hypervariable region in hmtp210 of Avibacterium paragallinarum. J Vet Med Sci 79: 1210–1214.
Pérez-Escobar OA, Chomicki G, Condamine FL, Karremans AP, Bogarín D, Matzke NJ, Silvestro D, Antonelli A. 2017. Recent origin and rapid speciation of Neotropical orchids in the world’s richest plant biodiversity hotspot. New Phytol 215: 891–905. http://doi.wiley.com/10.1111/nph.14629.
Suárez-Esquivel M, Ruiz-Villalobos N, Castillo-Zeledón A, Jiménez-Rojas C, Roop II RM, Comerci DJ, Barquero-Calvo E, Chacón-Díaz C, Caswell CC, Baker KS, et al. 2016. Brucella abortus Strain 2308 Wisconsin Genome: Importance of the Definition of Reference Strains. Front Microbiol 7: 1557.
Campos-Sánchez R, Cremona M A, Pini A, Chiaromonte F, Makova K.D. A multi-scale genome-wide analysis of the determinants of human and mouse endogenous retrovirus distributions. Plos Computational Biology 2016; http://dx.doi.org/10.1371/journal.pcbi.1004956.
Tomaszkiewicz M, Rangavittal S, Michalovova M, Campos-Sánchez R, Fescemyer H, Ye D, O'Brien P, Chikhi R, Ryder O, Ferguson-Smith MA, et al. A Time- and Cost-Effective Strategy to Sequence Mammalian Y Chromosomes: An Application to the de novo Assembly of Gorilla Y. Genome Research 2016; 26:1-11.
Costa CL, López-Ureña D, de Oliveira Assis T, Ribeiro RA, Silva ROS, Rupnik M, Wilcox MH, de Carvalho AF, do Carmo AO, Dias AAM, et al. 2016. A MLST Clade 2 Clostridium difficile strain with a variant TcdB induces severe inflammatory and oxidative response associated with mucosal disruption. Anaerobe 40: 76–84.
Coto JC, Siles F, Mora-Rodriguez R. 2016. Biocomputing platform module for cancer genomics and chemotherapy. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–6.
Edwin B-V, Francisco S-C, RA M-R. 2016. A biocomputational application for the automated construction of large-scale metabolic models from transcriptomic data. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–6, IEEE http://ieeexplore.ieee.org/document/7942349/
Man-Sai A, Francisco S-C, Mora-Rodriguez R. 2016. A biocomputational platform for the automated construction of large-scale mathematical models of miRNA-transcription factor networks for studies on gene dosage compensation. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–7.
Martinez A, Mora R, López G, Bolaños C, Alvarado D, Solano A, López M, Quirós S, Báez A. 2016. Design and Evaluation of a Personalized Cancer Treatment System Using Human-Computer Interaction Techniques. pp. 717–727, Springer, Cham http://link.springer.com/10.1007/978-3-319-31232-3_67
Molina-Mora J, Mora-Rodriguez R. 2016. Identification of cancer chemosensitivity by ODE and GMM modeling of heterogeneous cellular response to perturbations in fluorescent sphingolipid metabolism. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–6.
Mora-Rodriguez R, Molina-Mora J. 2016. Characterization of heterogeneous response to chemotherapy by perturbation-based modeling of fluorescent sphingolipid metabolism in cancer cell subpopulations. En 2016 IEEE 36th Central American and Panama Convention (CONCAPAN XXXVI), pp. 1–7.
Karremans AP, ALBERTAZZI FJ, BAKKER FT, Bogarín D, EURLINGS MCM, PRIDGEON A, Pupulin F, Gravendeel B. 2016a. Phylogenetic reassessment of Specklinia and its allied genera in the Pleurothallidinae (Orchidaceae). Phytotaxa 272: 1. http://biotaxa.org/Phytotaxa/article/view/phytotaxa.272.1.1.
Karremans AP, Bogarín D, Díaz-Morales M, Fernández M, Oses L, Pupulin F. 2016b. Phylogenetic Reassessment of Acianthera(Orchidaceae: Pleurothallidinae). Harvard Pap Bot 21: 171–187. http://www.bioone.org/doi/10.3100/hpib.v21iss2.2016.n4.
Quesada-Gómez C, López-Ureña D, Acuña-Amador L, Villalobos-Zúñiga M, Du T, Freire R, Guzmán-Verri C, del Mar Gamboa-Coronado M, Lawley TD, Moreno E, et al. 2015. Emergence of an outbreak-associated Clostridium difficile variant with increased virulence. J Clin Microbiol 53: 1216–26.
Calderon S, Saenz A, Mora R, Siles F, Orozco I, Buemi ME. 2015. DeWAFF: A novel image abstraction approach to improve the performance of a cell tracking system. En 2015 4th International Work Conference on Bioinspired Intelligence (IWOBI), pp. 81–88.
Igea J, Bogarín D, Papadopulos AST, Savolainen V. 2015. A comparative analysis of island floras challenges taxonomy-based biogeographical models of speciation. Evolution (N Y) 69: 482–491. http://doi.wiley.com/10.1111/evo.12587.
Campos-Sánchez R, Kapusta A, Feschotte C, Chiaromonte F, Makova K.D. Genome landscape of human, bat and ex vivo DNA transposons. Molecular Biology and Evolution 2014; 31(7):1816-1832.
Bogarín D, Karremans AP, Rincón R, Gravendeel B. 2013. A new Specklinia (Orchidaceae: Pleurothallidinae) from Costa Rica and Panama. Phytotaxa 115: 31. http://biotaxa.org/Phytotaxa/article/view/phytotaxa.115.2.1.
Mora R, Dokic I, Kees T, Hüber CM, Keitel D, Geibig R, Brügge B, Zentgraf H, Brady NR, Régnier-Vigouroux A. 2010. Sphingolipid rheostat alterations related to transformation can be exploited for specific induction of lysosomal cell death in murine and human glioma. Glia 58: n/a-n/a.
Lahaye R, van der Bank M, Bogarín D, Warner J, Pupulin F, Gigot G, Maurin O, Duthoit S, Barraclough TG, Savolainen V. 2008. DNA barcoding the floras of biodiversity hotspots. Proc Natl Acad Sci U S A 105: 2923–2928. http://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&id=18258745&retmode=ref&cmd=prlinks.
